NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1002023

Scaffold Ga0181387_1002023


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1002023 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4188
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y
F044531Metagenome / Metatranscriptome154Y
F045787Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10020231F045787N/AMQKVLIKLIELMGVTAGDKVVIEAVDYYLWRLDLPLGKIDGGTYEGKHWGDAVIEDTDAWLTFTVGNLYAKNKFSIGEGIVDINYAEGNQGLAYTGDLEDVVTQRIKDLYNLKADGSEQGMQGDDYISLDIWMDGLGDLELTDEQMDADDDDTVSENYLKQFCRFENYPGVTNGDLRQAVLAS
Ga0181387_10020232F007985GGAGMQQQYKVNNTIFNNLEEATAHVATLNKAVTIEPYTPPSAESKKLSVVRNMLVREMLEWAGSFVHHMSPSTDVSWMYSFEDADGNSDAGDCYYEDCTDVTFGNNLMWADACDDYQSAVDNFDSLLGDYNSYNTEDKLSDMLNNMYHTMSDHSSETDDYIGCVRDSIEKMCANNPNIAHSYHHPSRRTTISFSGNVDAMYNSYMLDRNS
Ga0181387_10020233F044531GGAGMQKVFNSIRVDNNTHITDGDTELTTAQVSKGFWLCGFDRAGSCFEMTKISRARAKECLFDYGTYALKDCDITDFDCATYYWHEEMADGGILRVH
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