NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1002583

Scaffold Ga0181387_1002583


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1002583 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3675
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Filimonas → unclassified Filimonas → Filimonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083272Metagenome / Metatranscriptome113N
F103919Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10025836F083272AGGMKKSQIHKIIREEFVNILREQTLITEAFQDPIARMLAKDRSLENNWFKFFGAMARSFDIAWDKVPKGSFQKVAPGSPLAKKGLAIYYIKDDVENPFATSDRYGYSRDAKIYGPAVLAATINNKIAYQNERGDSARIGVGKARRSEPLGKAIRGTMQVNKLKQIADEVYVFDLESYRGGTTALKSARAELKMGKDKFTNHKAWKKANLDRYEDILRSRVGGRDEVDRMVAEIVKLANQAVSDAVSGALKQDRYGDIMTTVAGQEVMLKDVTQSMDNAIKDYQRYIQYENEEAGEIKRGVDRGVKSYYGEKKKEYAMELKRYLKGFKTGKIKRY
Ga0181387_10025838F103919N/AMEHLFGDPVGEIESIIDEMRNIVYIEGVGRCRVITVNRTNENGVNEPYDVYEPIEDK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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