NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1006435

Scaffold Ga0181387_1006435


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1006435 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2300
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F023319Metagenome210N
F024676Metagenome205Y
F054940Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10064351F008925AGGAGMTTKSKPKIDAVTLNLVNKLKQIDDTINEGAWEYIHLGDILRLQDAFHTAINHYDLKKKGGIGEHGVDEGKYTQFWHSDYVCYTNPEAYDPSKVEEEDDE
Ga0181387_10064354F023319AGGAGGMSKKIKCQREGCSNKAYPEDMENRASNLLLCDDCYTEIRYLMADYLDIHIQEIKIXVLKNIK
Ga0181387_10064356F024676N/AMLGIDYMENVMYNKNIMRKDMYVIAMPYPNEIQLPDILEENNGEVMYFKNKNDAKKFLQNLYDDRNIHIQALIDDNIEIMRVQXMN
Ga0181387_10064358F054940GAGMNLLEEEIKELIKERYYEYLEEGYESFEAMELAKRDIHETKEVEIDAYNKVYDSSFDID
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