NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1017136

Scaffold Ga0181387_1017136


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1017136 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1402
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019327Metagenome / Metatranscriptome230Y
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10171361F033761N/ADDTFQGNHTELFTFFENQGLDVELHHDFAGLRTLLLSKGDDDYPYDFDPAFETEINNATGFCLYLKLGDDVVATYAAKKLMYATFIEGMKAKFDGTYENPDLGTTLEEAYSSCQWVSKDHRGKKWGRALDHLKKDVVFDIMKCDLNYAIHKEAYTDYHTTHLAYEVSEKLALIPNGDVGGAGEAIDKIYNITYINSTQWTNKQSDIKALYS
Ga0181387_10171362F019327GGAVTLKHYTLRPTELDSKNISQIHKIIKQIIGKKRDEYWKNYEDYSVYGQTAITIGLIDEDVKTFSSIYTRDFYGDGVYRIMNRWLIDDEIRETGGSKTYGGEHRFFDMIHQQIEYVKSLNAKFYFISRQRKNTKWLRWYFDRFNKQYGTDLMISDKQYMVCNGSEYDCSQTLIYPKDKIVPFKSYK
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