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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017710 Open in IMG/M |
| Scaffold ID | Ga0181403_1000063 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24395 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (17.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → environmental samples → uncultured virus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005218 | Metagenome / Metatranscriptome | 408 | Y |
| F011860 | Metagenome / Metatranscriptome | 286 | Y |
| F015999 | Metagenome / Metatranscriptome | 250 | Y |
| F085545 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181403_10000635 | F005218 | N/A | MANDNFYGYKRKSNKVKTLQGARGSVDLDFESINPYEFKKGMNAELGKLGTTLRESDEDQREKATENVLKNLKEVAAYYSYMEHYETTTRNMDRKPSFKAFLKELGDHSYKEVTEKFTEDKMKEIKLKENIRAEVRNKINELFKTT |
| Ga0181403_10000637 | F085545 | N/A | MVNIDSLVNEWAYRCEKGYPDMDSPSDLRVLKTILKEEGITIPQFQQVISEQEKSDELTIKDIEDILNQIKDDKAAIKKIYNFISNRPGEKGFFGVADASNVTDKTVDTSNAPQVIFDLLSNSGDLKKYIDLDKPGFGEIGKEGNFLDFFEGKSGISKDTLTKMFNFSGKESGRGVGKGEVAMALLFKDVKMAAAGGGDLNWGGKSLEVKGSSARLGGRDRKFEGFERTALGQLAIKYDKSDKRLTTLITNLSDEDGLDKKELLDAVIDFESKAHPKGDAGKYFTEDILDNPIELRKSFTKNLIKNYSTSKNIDHFIWWNSDDIFGKYLSFKPEEADDLVDKGSLRTNNIFVYQLDPSISKP |
| Ga0181403_10000638 | F015999 | N/A | MSLNSFFDSIDTDAQFDAWRNSIKQKLIHLKNTIPLENRLELHYVGETLEFLDSLNVLSSDFLAHNPEAQSKTHFKERLRVCNSYYKKFGKQ |
| Ga0181403_10000639 | F011860 | N/A | MAYKRQLQIALDRLDQGLSRVHSMVKRGENTKALHYMENDLKELYEELQNIISITPEKDQSRVGFMG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |