NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1015791

Scaffold Ga0181403_1015791


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1015791 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1613
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059875Metagenome133Y
F073760Metagenome120N
F092873Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181403_10157911F092873GAGMNNILNKKFIEVAAKSGYNSDFIESYMIKKELTAKGFTFRRSALDQLLKKNSKKISDFIRDTYLPKEQKNKFAQISKILNPKKNAPKYFTENDLAFDLSHWFNSFLNGDVLVSPEYFIGDTVEIPVIGSLFGNGQVRLHKGREITKINIHPKYANCHAIESQIGSSRGYMRLFVPSKNISHLANNRFGFAQDKKSKIIWCGYIEPQSNGKYNILDKSYSTGKTYGASVENISLSWSVEIKAEYYPTFYNN
Ga0181403_10157912F059875GAGMKVLVLIFGVITNDGQIDLVKVPKFELKNINSCEKAIETHTKWVDNPYFGQNDLPFGFYTYKNRVVMLQYCVLKGVESE
Ga0181403_10157913F073760AGGGGGVNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVATAKFLNCSKFEYHCNVGGVPDLVFKDLKLQVRTQLPKNNNNNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTYVLGQE
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