NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1023889

Scaffold Ga0181403_1023889


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1023889 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1295
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046315Metagenome151Y
F073760Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181403_10238891F046315N/AMNNLMNKKLLEYSTKLGYKDSFIESYMKRIDLLPKEFRFRKTSLDQLLKETNKKVSDFIKDTYSTKEQKNKFAQISKILNPKKNAPKYYTENDLANDLAHWFNTILNLDEVVSANYFLGDSVQIDCIGELFGNGQIGIHKVKDRHKINIHPKYASFQAIESLIDSTRGLLMLFKPSKIIDRNANNRNVVCQDQKTKVIWYGFLEPKSNG
Ga0181403_10238893F073760GAGMENNEITLDLYEMQSAAHLGILRCLESEKYQEKWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQIPKN
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