NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1002558

Scaffold Ga0181391_1002558


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1002558 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5083
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F021402Metagenome219N
F050679Metagenome / Metatranscriptome145N
F077486Metagenome / Metatranscriptome117N
F090862Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100255810F050679N/AMANKTKKNPKVLQEIYEELATGASIRSCLSPRNKKEDRPCWQSFRTWMAKDPEIRKNYEQAKTDGIEYLLSDATDTINQALEDSKFKEKTDLGQTHLIKSFIDLTKWKSERLAPKTYMKKDSLQLLGSDSSPLVVKWDK
Ga0181391_10025585F001839GGAMKTFEKFDSYLLNNKVLSANEKVVYIICKSFENAPQGCRVSHQYLMDRTGIKTRKTLIKCLDRLTLFGMLARKQIDNSTCHYVFEKELMQEYIKHNQNKRRKIKLSKNRNNPQFHQQTDNVIHIVKKDK
Ga0181391_10025587F090862AGGAMVNYVDPKLVAKALARVTKSSNVHYKNAVDKIKKNRKQYYQNKTTKTLQKSLSKDRFNTYLEELYKHDND
Ga0181391_10025588F021402AGGAMITTNLTIDELDRFLQISSFCDSKMPKVKAKTLPTMFKVIDNSLGIGDDKDSIKYSDKHLARLKITLTSRQITIYDFIAILMLDATEKDRELLYLRNFPQRKSLRQMRRMYLDWSHTKIGYEYNKALIAVCKIANKNLKKYLTS
Ga0181391_10025589F077486GAGMLNQLDSLLTESERNNMLKNNKILTNPVSMFKIDIVKVFKKRETLKDIFKCPKLQKKHKLQDFKHPL
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