NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1003089

Scaffold Ga0181391_1003089


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1003089 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4599
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053550Metagenome / Metatranscriptome141Y
F070556Metagenome / Metatranscriptome123Y
F092748Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100308910F053550N/AMREEIKKARIKKRVLKQYPNASVEYTNTGIQIMSGDTYIAEEFYLPATNCEDKAWEYAALACKTSQQFNRTHPMRMDLVDIESKINRINRRRSPRLKRK
Ga0181391_10030897F070556N/AMGFHKRYITDDQIIEIYRKQGNQAVIELFTKGVDAVITSGDLSEHVYDILSIGILTNSDKWNTISEIISSASIKKGFNN
Ga0181391_10030898F092748N/AMKHITKTYSSINQVAAINEEKVKHLGKNYASIDFEIKEHVNATEFKYAKMKPIVGTFVIGNRRVEVTYSELNQILRTANDSMQACDQAYRMGKWGKATR
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