NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1003808

Scaffold Ga0181391_1003808


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1003808 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4139
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021778Metagenome / Metatranscriptome217N
F025038Metagenome / Metatranscriptome203N
F048992Metagenome147N
F054022Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100380810F054022N/AMKIPHFKKGLKVQFVEASTDFIDPPTQDILWRYGKILFQVKSGHGAISYYIEENKKKVKISRYL
Ga0181391_10038082F021778GGAGGMGMPKFLEDYTTVDTLISKMNTEYPNCRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEAAPKKTIEKELEKAGIEYEDVSVSQTHIINNIKSFAMDVANDNKANAANWYAQALGELDIPEAKLTIDNMKSVKNKLQDIATNLQVGDA
Ga0181391_10038088F025038GGAMQVNKNNRRLFVEDEYDLYDVRKARPFWNDVCEVNGWEIVKDEEDFAEDYVCQINNELYFMELQVVGYWHNFDLSNISNVRISASKVKLLRQNEHGGLIFTNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLRTINPREVNVLDTNYCDCLKQHLPIMQRSGGRMAFAQKDYNIRGKNGICC
Ga0181391_10038089F048992GAGGMEYAADDINYGYMSIIMHINSEYTLIDKIENIREIDGTIEHPIFGKTKGGVSFSLFLKGFYTVFEAVLNYGDRFDVYVVNEQGNTVMMDDDLDHLISLLHILYVNKKAEEDSLLTRALNPHTYRKAAKKMFYNEDPPF
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