NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1018118

Scaffold Ga0181391_1018118


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1018118 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1765
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012811Metagenome277Y
F042638Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_10181181F042638N/AMDRMFMCLTRRYLMSKGFLWFAQNNANTDYVELSIKLARSIKKYNKHNKICVVTDKQSQFNDESVDVVKVMKDDASATHDI
Ga0181391_10181184F012811N/ADTHVDLEEDLQFMDTKFYGQGKCRSLKPQPTLPTIKLHEIKNEKLRSTMAGFGFTDILQMQYVELLPNSVLPIHMDDFTYEDGKDIIDGPTQLYCMLRGNAEDIKFKFKNVGLLDVSRPIFINNRRFVHSLVYTGTVPRGVLLAYGIRKQR

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