NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1024036

Scaffold Ga0181391_1024036


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1024036 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1505
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_10240362F015102N/AMSEEDDNAEDKNTPFDDVTHWAGKLSSQGDDSNERTNKRNTRRKTKSNFLRKKLGMEKK
Ga0181391_10240363F027536GGAGGMRVSKVIPIDRVLNECRRRADDAWWDGNDDEARLHEQEVKLYEDDKEKGVLWVPNF
Ga0181391_10240364F029123AGGAGMSYEVWFGKNGKWFGYHSFKYRMEAVACELKYLNIFKDLTVEIRRREHAS
Ga0181391_10240365F006217AGGAMIEILLAMVEDTNQIHKYCMSKHEHWTGRAACVQELQHAQRKMEVKELRQFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGTDKVKKEKC
Ga0181391_10240366F005813N/AYTRDTDQDGGSNMKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPALEEVRTGEPSRKAMSWFRWAHDCMLRGQYEDAKEMLRKGLIYDRDTTSDG
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