NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1064123

Scaffold Ga0181391_1064123


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1064123 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)852
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006918Metagenome362Y
F015994Metagenome / Metatranscriptome250Y
F029277Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_10641232F029277N/AMTRNELKTMFLQMDCSNIPVRKQIIVNYNNNPWWEGYGDVKILSDGPSGYSSFSTHQENPFLFVSDLKEFNSGEYELIVK
Ga0181391_10641233F015994N/AMFKVNKKDMFAKNMSQQELHQVWVKMKEKQESDKWIDQLEKQYNEIQENKYY
Ga0181391_10641234F006918N/AMRDYSITRKEGEWYNAQVTDSYGKKYQNYFEFAHEANDWIYYIWEKEEWFNSVNSQ
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