Scaffold Ga0181412

Basic Information
Taxon OID	3300017714 Open in IMG/M
Scaffold ID	Ga0181412_1000210 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25380
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (11.63%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

25380

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (11.63%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016832	Metagenome / Metatranscriptome	244	Y
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181412_100021018	F016832	N/A	MNNEIKYSTRHIYVPADKIDSLVEFQEKCRNNGHKSYSSVIIKLIEDYNKNN
Ga0181412_100021029	F038672	N/A	MNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLETLINILELIHELQDEVRQQRKQIATLKYENAVAYKENAILKTDFDKYKFNLKKAELDSPNLKDNE
Ga0181412_100021033	F030436	N/A	MKSTLNRIADLIEEYNSTDIFDGNKLNQQLKELTSRLYHIETMRTKAHEDYEKVIHTKVAEGFSVARATNEAKVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0181412_100021034	F056150	GAG	MDRKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGEDFIIQLDSENSIKKYVYKLCIFQIISERGHYRTKYYIPSHFSSLEDIETYSNSCFKDEVLNDLINSLDGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKLNWSLNEFYT
Ga0181412_100021038	F043411	N/A	MRMIDPMMTKFINETMKRRLTYKGKRVYIKSLDTKKAIVSYTKEGNYKQFKVNIKDLVDF
Ga0181412_100021042	F029278	N/A	MEITIPTKWEDITIGKYINLRPVLNSELSPIERVVNILAVLTGQKKEVIKNISLDQYKTIKEKMSFLETELPKQLKDRKFKIGGKWYKFEVKAQNLIFGEYINTMEILQSAKDDQEAIFNNLHRILTTICRPIEKKFLRWKDIKVDGELLRETQENFFNNMPMTIAYPIGVFFYTHSESLTETIKICLMEEAQRLKREAETEIALIRDGDGGKH
Ga0181412_100021043	F020903	N/A	VSDQLDIFGFDVNQLEEVKIDNPSTLAEVFNNIAADMVFCLKQSVQKEKLTYKGGLLESIKMPVKMFGFRMVATLFLADYYDYLNKGVKGIGGTRKTENGKYITGPMKAWEIKAPESPYQFKKGPSVSHIRQWAKSKGLNEYTVRTSIAHKGIRPRYFFDNCMKETFYGETFNRFKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181412_1000210

Overview

Ecosystem & Geography

Associated Families

Sequences