NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1004963

Scaffold Ga0181412_1004963


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1004963 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4407
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y
F046315Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0181412_10049634F046315N/AMNHLMNKKFMEYSVKSSYNSEFVESYMKRKDLLPKEFKFRRTALDLLLKESNKKISDFVKDTYKENEEKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFCDLDTVVSANFFIGETCQINVFGSLFGNGQIDINKGKDIYKINIHPKYSNCLAVESKIGSSRGLMRLYVPKKNIDRNADNRFAIAQDKKTKIIWFGFLEPKSNGKYDILDKSYSTGKTIGQLAENINLAWSSEIKASYYPTIYNI
Ga0181412_10049636F008915N/AMGFIVDNEIITLDLYEMQSASHLGILRCLESEKHKESWGYNYKGSLNDQIAKSISGAMGEVAASKFLKIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKNNNSLIIRPKAKPNEFYILVIDEAPKFKILGFVNSTFVLGQEKWKTTFGLDRPFCYSIPPEKLTPIELLKNGTWN
Ga0181412_10049638F004990GGAMYGDPKKPCKICGEGADIREGNIYYCCDHYALYVLGKPMSQIERELNND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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