NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1018932

Scaffold Ga0181412_1018932


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1018932 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1955
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F008022Metagenome340Y
F022645Metagenome213Y
F082545Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181412_10189322F008022N/AMTTTELQAKIEALQAALETKTQEQNAYQGQIDTLKKQLADLNKPKLTMLQFDELTELVEQGIGEFDFDDLDNYSIDYGIDYDNRVTCESFCFDNIDELARVICETVYKMFAEANEDDNQLNQD
Ga0181412_10189323F005491N/AMSTFYKDTRINGKLVRLEDVIDVIYARALETIDDSLYELLNDKDDDEFYEDYKEAFGHIVEKLQAFHNNED
Ga0181412_10189324F004523N/AMEYLSTEIKSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLEPKPLRFATYNTGYVRNVTEGLSSSYQINKTKPVTYESGMTGVERIMIDSWEDRLIYLAKFIIKNYYQKPTYIMSDYVMDCLREAYHEQNKTSLPFGDDIQVIINGHRYNLS
Ga0181412_10189325F022645N/AMKDTNEIEKQLQHKADKYIKQKAEEMFEIHREIAMYLGGKLPNYIDYITDYSDYSNDLMANRGNYFTSSSPSAMKLKYQQDLAKNYKEKLVAKYTSELISKLEIFD
Ga0181412_10189326F082545N/AMDFTYITVLDFGDGAVCQYNLEEVGDNYIFQDKDEPQAEEVEKFLIDQGHKLKDCEWMMHADPTINQIKL
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