NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1041146

Scaffold Ga0181412_1041146


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1041146 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1204
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067634Metagenome / Metatranscriptome125Y
F097119Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181412_10411462F097119AGGAGMQKLISNREMFRQLLARDITAILEDVNAGTWVDMTYLRHNLHNTLSARHYMNLCTAQGHCYTSFSDRFYRAMQSINDTGYGLTIRKDKQTNKLFVFSTKFADNYVEAIADTFEDWTTCYKSNRGYEINTQKDEVA
Ga0181412_10411463F067634N/ASTDVDWMYSVEDDTGFSDAGDTWYEDLGNVSFGSNLQWEDDLQDYNSAVDNFDSLLCTYDNYTTVDSLSEMLNTMYHTMSDHSSETDSYIGEIRHSIKQFCEGNSNIAHSYDHPRRRTTISFVGNVDKMYKAYMLERNS

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