NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1041388

Scaffold Ga0181412_1041388


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1041388 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1199
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F062830Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0181412_10413882F008925AGGAGMKKIKPKIDTVTLTLINKLKRIDDTINEGAWEYIHLGDIIRLQDAFQEAINYYDLKKEGGIHDYGADEGKYQQFYHSDYVCHTDPKAFDPSKVEEEDDE
Ga0181412_10413883F062830AGGAGMQYRIYRHPEGIGLNGKEFAVDDKKDIMLFNTVNDAEKFLVKAVGKKATRVELEDNHGLHIEENTDEEN
Ga0181412_10413884F012581AGGAGMAKYTLYAKKVYYYRKDINAQDRKSAEERGRQYESKDNAERLFEPTVEEFYITSIEESDDAV
Ga0181412_10413886F013187N/ARIKMPTKAKIKKKPKKNNWVWIFGDEMQEIWEHFGFPYPDPDDRMKLKFVKYEARGSYDK

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