NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181404_1004495

Scaffold Ga0181404_1004495


Overview

Basic Information
Taxon OID3300017717 Open in IMG/M
Scaffold IDGa0181404_1004495 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3862
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015999Metagenome / Metatranscriptome250Y
F085545Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181404_10044957F085545N/AMVNIDSLVNEWAYRCEKGYPDMDSSSDLRVLKTILKEEGITIPQFQQVISEQEKSDELTIKDIEDILNQIKDDKAAIKKIYNFISNRPGEKGFFGVADASNVTDKTVDTSNAPQVIFDLLSNSGDLKKYIDLDKPGFGEIGKEGNFLDFFEGKSGISKDTLTKMFNFSGKESGRGVGKGEVAMALLFKDVKMAAAGGGDLNWGGKSLEVKGSSARLGGRDRKFEGFERTALGQLAIKYDKSDKRLTTLITNLSDEDGLDKKELLDAVIDFESKAHPKGDAGKYFTEDILDNPIELRKSFTKNLIKNYSTSKNIDHFIWWNSDDIFGKYLSFKPEEADDLVDKGSLRTNNIFVYQLDPSISKP
Ga0181404_10044958F015999N/AMSLNSFFDSIDTDAQFDAWRNSIKQKLIHLKNTIPLENRLELHYVGETLEFLDSLNVLSSDFLAHNPEAQSKTHFKERLRVCNSYYKKFGK
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