NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181404_1043680

Scaffold Ga0181404_1043680


Overview

Basic Information
Taxon OID3300017717 Open in IMG/M
Scaffold IDGa0181404_1043680 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025038Metagenome / Metatranscriptome203N
F048992Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0181404_10436801F025038AGGTGGMMVGIIGTVVSIVGGDMPDQVNKNNRRLFVEDEYDLYDIRKARPFWNDVCEVNGWEIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSKISNVRISASKVRLLREKDNGGLIFLNCVTNRFFAINVNQVTPKMKKDSVREQFYEIPLRTINPREVNVLDTNYCDCLEQHLPIMQRSGGRMAFAQKDYNIRGANGICCR
Ga0181404_10436802F048992AGGGGGMEYAADDINYGYMSIIMHINSEYTLIDKIENIREIDGTIEHPVFGKNKGGVSFSLFLRGFYTVFEAVLNYGDRFDVYVVNESGNTTMIDEDLEHLISLLHILYINKKAEEDDLLNRALNPHTYRKAAKKMFYNEDPPF
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