NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181404_1081764

Scaffold Ga0181404_1081764


Overview

Basic Information
Taxon OID3300017717 Open in IMG/M
Scaffold IDGa0181404_1081764 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)798
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027318Metagenome / Metatranscriptome195Y
F039342Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0181404_10817642F027318N/AMAMHQGTMKLTPQQANYIPAGKFIYTDETFLVKQPIAKEEAFARQGKELVPAYFSFKHGGQEFQPVFQPSPSLPMNYGTYIYNIVDGYQ
Ga0181404_10817643F039342N/AMSYTLDTPYSSQVVFMNSENSVFKQIDGEGSYTYSFNTPIQLPTNCEMLISVTDATFPNVIPNVTSLNNKISFHVPIFSKFFTITLQEDDGNIDKVYNVTEWLSYVNAKIVIESIGQFTLYGE
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