NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181390_1010355

Scaffold Ga0181390_1010355


Overview

Basic Information
Taxon OID3300017719 Open in IMG/M
Scaffold IDGa0181390_1010355 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3287
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F008022Metagenome340Y
F082545Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181390_10103553F082545N/AMDFTYITVLDFGDGAVCQYNLEEVGDNYIFQDKDEPQAEEVEKFLIDQGHRMKDCEWMMHADPTINQIKL
Ga0181390_10103554F004523N/AMEYMSTEIKSAREANTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLNPKPIRFATYTTGYVRNVTEGLSSSYQINKTKPVTYESGMTGVERIMIDSWEDRLIYLAKFIVKNYYQKTTYIMSDYVMDCLREAYVRDYNNQPSNRLPFGDEVQVIVNGHRYNLS
Ga0181390_10103557F008022N/AMTKVKLEAKIEALQAALDTKAQEQNAYQGQIDTLNKQLEDLNKPKLTPLQFDDLHGAIEEAVGAFDFDDADNFDVDFHIDYDNRIAIESMSFQNADEIVRVIYNDISDLFAEADAPEDDNQLNQD
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