Basic Information | |
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Taxon OID | 3300017719 Open in IMG/M |
Scaffold ID | Ga0181390_1085707 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 863 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005813 | Metagenome / Metatranscriptome | 389 | Y |
F027536 | Metagenome | 194 | Y |
F029123 | Metagenome | 189 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181390_10857071 | F027536 | GGAGG | MRVSKVIPIDRVLNECRRRADDAWWDGKDDEAKLHEQEVKLYEQDKQEGILWVPNF |
Ga0181390_10857072 | F029123 | AGGAG | MSYEVWFGKNGKWFGYHSFKHRMEAVACELKYLNIFKDLTVEIRRREHAS |
Ga0181390_10857074 | F005813 | N/A | QADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPALEEVRTGEPSRKAMSWFRWAHDCMLRGQYEDAKEMLRKGLIYDRDTTSDG |
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