Scaffold Ga0181383_1000081

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181383_1000081

Scaffold Ga0181383_1000081

Overview

Basic Information
Taxon OID	3300017720 Open in IMG/M
Scaffold ID	Ga0181383_1000081 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26028
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (81.58%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F023319	Metagenome	210	N
F024676	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181383_10000813	F008925	AGGAG	MTTKSKPKIDAVTLNLVNKLKQIDDTINEGAWEYIHLGDILRLQDAFHTTINHYDLKKKGGIGEHGADEGKYTQFWHSDYVCYTNPEAYDPSKVEEEDDE
Ga0181383_10000816	F023319	AGGAGG	MSKKIKCQREGCSNKAYPEDMENRASNLLLCDDCYTEIRYLMADYLDIHIQEIKI
Ga0181383_10000819	F024676	N/A	MLGIDYMENVMYNKNIMRKDMYVIAMPYPNEIQLPDILEENNGEVMYFKNKNDAKKFLQNLYDDRNIHIQALIDDNIEIMRVQ

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