Scaffold Ga0181383_1008438

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181383_1008438

Scaffold Ga0181383_1008438

Overview

Basic Information
Taxon OID	3300017720 Open in IMG/M
Scaffold ID	Ga0181383_1008438 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2764
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026851	Metagenome	196	Y
F101070	Metagenome	102	Y
F105104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181383_10084383	F026851	AGGA	MTQQQIRQLLKDPDNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLHDPGEREVLMQLLKNMRDCERNMTIIATELEVHFDISA
Ga0181383_10084384	F105104	AGGAG	MLHHIYYINPAGADNYMIVPFDEIEGTVAFLESLDYEVVAYWPIQEEA
Ga0181383_10084389	F101070	GGAGG	MGRGKIRVDPMKLEAGDLIVTDGRMSLELGDVLLAVCKLSGEEMSETGKRHPFIDGRRVGDHWRLLSRLGVVEIWLDHYASWVVQVVKGQKETST

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