NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1033630

Scaffold Ga0181383_1033630


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1033630 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1381
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10336305F012581GGAGMAKYTLYAKKVYYYRKEITAQDRKSAEKRGADYEADDNAERLFEPTGEEFYITSIEENEDGR
Ga0181383_10336307F008925AGGAGMTVKNKLKISEVTLNLINKLKKIDDTINEGAWEYIHLGDIIRLQDAFQEAINYYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE

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