NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1034498

Scaffold Ga0181383_1034498


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1034498 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1362
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016882Metagenome / Metatranscriptome244Y
F057678Metagenome / Metatranscriptome136N
F061281Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10344981F016882GAGMAYYVSRVKIATDTPKGVKWLNESYLVNAVSVGHAEQLVHEDFKDSGSEFEVKSVSASPINKVIGTTKKL
Ga0181383_10344982F057678N/AMVEYEVNDKVVFRFNNVNEVAVITNVRRHKKTITGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDANLTANWIGSDSETNLFAKENLGHTRQNFPKGMPLFLDGEGPGGVQHFEKRNDFIFPTQGPRSY
Ga0181383_10344983F061281N/AMILYFQLKDLDHINMNKFQKRVLKQFPKAYVESSATGLRIINNDQYLAKDFYMPDTTCEDTAWEYAALACKMAQNFNRAHPSRMDLSDVENKLARINRRKNNGRRVK
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