NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181373_1004671

Scaffold Ga0181373_1004671


Overview

Basic Information
Taxon OID3300017721 Open in IMG/M
Scaffold IDGa0181373_1004671 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2632
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021526Metagenome218Y
F027158Metagenome195N
F087026Metagenome110Y
F101070Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0181373_10046711F027158GGAGGMTNPTQTPISELTLAQVISLTQAGLIGLKDGSPVYTSKADKAAKAGATKARRQGVLAEVTEFFASPQGQNAKFFSVKPTSGMFAACALAINTKVQASREDILWSLKQLEKSGLASQVGIKSKEEDGKKFMVVVPVAEVNNFQRRWVHTIEAAPAEDAPAQDGSAE
Ga0181373_10046712F101070GGAGGMGRGKIRVDPVDLEAGDLLVTDGRMSLELGDVLLAVRKLSDIELSQSGKRHPFVDGRRVGDHWRLLSRLGVVDMWLDPYASWVVQVVKGQKKTAT
Ga0181373_10046713F087026AGGAGGMASGKWKAGDLVQVESVQKTGWGDECNNHLVLVLRIHSSKRPTSEQHYPLTAYLDETSRKEDIIYEVLRDDGKYLKLGLKDYAWPGARLTNRLVQSSCGEE
Ga0181373_10046717F021526GGAGMRYFSIDYRSPPSGMGQIIDTTKPEKVGDQYNFILVDYGSDPHEDPSYVMTKYFYSEQAAEEGWAGAVLPQIFQFLRDQKVTHVYDGELAYEYEGGYENDFEGLFTLDRWIEIMSSYL
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