NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181373_1006598

Scaffold Ga0181373_1006598


Overview

Basic Information
Taxon OID3300017721 Open in IMG/M
Scaffold IDGa0181373_1006598 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2209
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049285Metagenome147N
F067202Metagenome126Y
F081883Metagenome114N
F089518Metagenome109N
F096197Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181373_10065983F049285AGAAGGMKLIKVRINRTIEYEVSVGVDNDHKYEQVRDYLQTIDWDREIGISPQNYKQISDYYDWIDWEEAQ
Ga0181373_10065986F081883GAGGMTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLNDVSWHQTADTVSNYKLDDERELNFDREDNLR
Ga0181373_10065987F067202GAGGMRFKDIVITAEDLECHTIDTVADAINEHIIDLGLATPETLTGFNWRLDVRMRMDNDDT
Ga0181373_10065988F096197AGGAMTNFTKEKLKAIREAMQLGLDRMQDEIEGITFNVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILSRLDTSKVHDYHDHRSVRYRMQLVGYKTKAKKMPWIVEDRLSGNEYKLTDVQARQWFEYEVQS
Ga0181373_10065989F089518N/ACFAYHSTKDTSELDRLVAKYLSMRGITIEVKKRNLS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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