Scaffold Ga0181398_1004307

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181398_1004307

Scaffold Ga0181398_1004307

Overview

Basic Information
Taxon OID	3300017725 Open in IMG/M
Scaffold ID	Ga0181398_1004307 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3814
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F006892	Metagenome	362	Y
F092873	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_10043071	F004990	GGA	MYGDPKKKCCACENGADLKESNKYYCCDHYALYVLGKPMSQI
Ga0181398_10043074	F092873	GAG	MNNILNKKFIEVAAKSGYNSDFIESYMIKKELTAKGFTFRRSALDQLLKKNSKKISDFIRDTYLPKEQKNKFAQISKILNPKKNAPKYFTENDLAFDLSHWFNSFSNGDVLVSPEYFIGDTVEIPVIGSLFGNGQVRLHKGREITKINIHPKYANCHAIESQIGSSRGYMRLFVPSKNISHLANNRFGFAQDKKSKIIWCGYIEPQSNGKYNILDKSYSTGKTYGASVENISLSWSVEIKAEYYPTFYNN
Ga0181398_10043076	F006892	GGAGG	MSDTGIIIPLKERVRDLETINEAHQKKNGQLRQEIQDKDKLIKELTEKINNPTKKMREQGEL

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