Scaffold Ga0181381_1001090

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181381_1001090

Scaffold Ga0181381_1001090

Overview

Basic Information
Taxon OID	3300017726 Open in IMG/M
Scaffold ID	Ga0181381_1001090 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8044
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (43.75%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008026	Metagenome	340	Y
F008400	Metagenome	334	Y
F100987	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181381_100109014	F100987	N/A	MVEKEKQERFAMTNAFPWDNPGKDDLKELQAALKKAGEEVTLQELQEIQRKVMRETAGLPDDEEIEYSLNRQEGV
Ga0181381_100109015	F008400	GGAGG	MSKQDNDILPKLALGMALFIAMKFVPKVLAWWRKRNKKDLL
Ga0181381_10010906	F008026	AGG	MARNKGSVVKLVSSKKALQMMGYKSQTSLDQFHDDEGFTKYEVSGINGRGGVGLAWDKKEINKWLRTEGRDTSEWLID

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