NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181381_1001090

Scaffold Ga0181381_1001090


Overview

Basic Information
Taxon OID3300017726 Open in IMG/M
Scaffold IDGa0181381_1001090 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8044
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008026Metagenome340Y
F008400Metagenome334Y
F100987Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181381_100109014F100987N/AMVEKEKQERFAMTNAFPWDNPGKDDLKELQAALKKAGEEVTLQELQEIQRKVMRETAGLPDDEEIEYSLNRQEGV
Ga0181381_100109015F008400GGAGGMSKQDNDILPKLALGMALFIAMKFVPKVLAWWRKRNKKDLL
Ga0181381_10010906F008026AGGMARNKGSVVKLVSSKKALQMMGYKSQTSLDQFHDDEGFTKYEVSGINGRGGVGLAWDKKEINKWLRTEGRDTSEWLID

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