NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181381_1002587

Scaffold Ga0181381_1002587


Overview

Basic Information
Taxon OID3300017726 Open in IMG/M
Scaffold IDGa0181381_1002587 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4861
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F038216Metagenome / Metatranscriptome166Y
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0181381_100258710F008883GAGGMNIGRYTIWYNHEQHVWDIYDGRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDRNHRRFWRVLRWWDKLRHGRR
Ga0181381_100258713F038216GAGMPPQMRIIIMTKQVNYGLHETIENSHRTLSSAIEMYAIYYSDWTEVLEELSQYYNSDEWKEAGYGEDLPRHIELNKKRNAIIRELQSIGKELRSIGLDVDLGDHAKVDEYYDSSEVAA
Ga0181381_10025873F073499N/AMTEQELEQWLRDNPWKANVIYPAGGIGFMMFIMYTCVQIIDSFLTGSFV
Ga0181381_10025875F002858AGGAGMLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVLRKDLELSLDDRGNVVMTKSTLDKILDLASDDLPEGDE
Ga0181381_10025876F023856AGGAGMRCRACNRILEESELTKKDTHGDFLDLCGICLSAAASAGVDTETMEYYQYEVFTDDENYDTLY
Ga0181381_10025877F024320AGGGGGMTFEEYEQGYYGGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYRHLEMLMVELHGKEWRDAL
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