NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181381_1016054

Scaffold Ga0181381_1016054


Overview

Basic Information
Taxon OID3300017726 Open in IMG/M
Scaffold IDGa0181381_1016054 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1727
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Chosvirus → Chosvirus KM23C739(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005019Metagenome415Y
F040332Metagenome162N
F055200Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0181381_10160541F055200N/AMIKIKLEPNEVELALNIAAKRYIGNLKMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSF
Ga0181381_10160542F005019GAGMYGDVRQCVKCSMSADIVEKGKDYCAECWFKYFSGESIEEYEKRVKQLDQARNDKNKTRT
Ga0181381_10160543F040332GGAMDTNEDSMIYAAKILKGKVNRNSNSRVQITLSTDVAMEYLKNNPHLIDQFDKPFMYRPNLPDKLEFIDYLKSQTTIKELVSNTDIAKTKIEHWFRKDNCFSYPTISDWNKIKPLLKDIKFDKELTYEVEKDWKEIE
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