Basic Information | |
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Taxon OID | 3300017727 Open in IMG/M |
Scaffold ID | Ga0181401_1000130 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29106 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (11.36%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020903 | Metagenome / Metatranscriptome | 221 | N |
F029278 | Metagenome / Metatranscriptome | 189 | N |
F038672 | Metagenome | 165 | N |
F043411 | Metagenome / Metatranscriptome | 156 | N |
F056150 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181401_100013011 | F038672 | N/A | MNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLETLMNILELIHELQDEVRQQRKQIATLKYENAVAYKENAILKTDFDKYKFNLKKAELDSPNLKDNE |
Ga0181401_100013017 | F056150 | N/A | LNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGENFIIQLDSENSIKKYVYKLCIFQIISERGHYRTKYYIPSHFSSLEDIETYSNSCFKDEVLNDLINSLDGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKLNWSLNEFYT |
Ga0181401_100013021 | F043411 | N/A | MRMIDPMMTKFINETMKRRLTYNGKRVYIKSLDTKKAIVSYTKEGNYKQFKVNIKDLVDF |
Ga0181401_100013025 | F029278 | N/A | MEITIPTKWEDITIGKYINLRPVLNSELSPIERVVNILAVLTGQKKEVIKNISLDQYKTIKEKMSFLETELPKQLKDRKFKIGGKWYKFEVKAQNLIFGEYINTMEILQSAKDDQEAIFNNLHRILTTICRPIEKKFLRWKDIKVDGELLRETQENFFNNMPMTIAYPIGVFFYTHSESLTETIKICLMEEAQRLKREAETEIASIKDGDGGKH |
Ga0181401_100013026 | F020903 | N/A | VSDQLDIFGFDVNQLEEVKIDNPSTLAEVFNNIAADMVFCLKQSVQKEKLTYKGGLLESIKMPVKMFGFRMVATLFLADYYDYLNKGVKGIGGTRKTENGKYITGPMKAWEIKAPESPYQFKKGPSVSHIRQWAKSKGLNEYAVRTSIAHKGIRPRYFFDNCMKETFYGETFNRFKTDIRVVSGERIAKGLKEILE |
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