NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181401_1000130

Scaffold Ga0181401_1000130


Overview

Basic Information
Taxon OID3300017727 Open in IMG/M
Scaffold IDGa0181401_1000130 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29106
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020903Metagenome / Metatranscriptome221N
F029278Metagenome / Metatranscriptome189N
F038672Metagenome165N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0181401_100013011F038672N/AMNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLETLMNILELIHELQDEVRQQRKQIATLKYENAVAYKENAILKTDFDKYKFNLKKAELDSPNLKDNE
Ga0181401_100013017F056150N/ALNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGENFIIQLDSENSIKKYVYKLCIFQIISERGHYRTKYYIPSHFSSLEDIETYSNSCFKDEVLNDLINSLDGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKLNWSLNEFYT
Ga0181401_100013021F043411N/AMRMIDPMMTKFINETMKRRLTYNGKRVYIKSLDTKKAIVSYTKEGNYKQFKVNIKDLVDF
Ga0181401_100013025F029278N/AMEITIPTKWEDITIGKYINLRPVLNSELSPIERVVNILAVLTGQKKEVIKNISLDQYKTIKEKMSFLETELPKQLKDRKFKIGGKWYKFEVKAQNLIFGEYINTMEILQSAKDDQEAIFNNLHRILTTICRPIEKKFLRWKDIKVDGELLRETQENFFNNMPMTIAYPIGVFFYTHSESLTETIKICLMEEAQRLKREAETEIASIKDGDGGKH
Ga0181401_100013026F020903N/AVSDQLDIFGFDVNQLEEVKIDNPSTLAEVFNNIAADMVFCLKQSVQKEKLTYKGGLLESIKMPVKMFGFRMVATLFLADYYDYLNKGVKGIGGTRKTENGKYITGPMKAWEIKAPESPYQFKKGPSVSHIRQWAKSKGLNEYAVRTSIAHKGIRPRYFFDNCMKETFYGETFNRFKTDIRVVSGERIAKGLKEILE
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