NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181401_1064154

Scaffold Ga0181401_1064154


Overview

Basic Information
Taxon OID3300017727 Open in IMG/M
Scaffold IDGa0181401_1064154 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)980
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000499Metagenome / Metatranscriptome1074Y
F021958Metagenome / Metatranscriptome216Y
F088823Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0181401_10641541F088823N/ANGTDGVNLAMNYVKKFNGACGFFIWKNPKCYNADGSKKDIKAMYANQGKEVDNATKHGLVYDLETDMFVPIKK
Ga0181401_10641542F000499N/AMQKEIHKEDYFGTLMCILVDESRRIMSTFNPTKQLHKIQNDMCKAGSWIDSMPIGTIVETVPQESIQKLQANVLPEYRRLAANLIDRFISEFEAQGGRRVEITEKFESMYKWRQ
Ga0181401_10641543F021958N/AMATIKEKKKLIRTIKNPNRFFRLNFSRYGGEVAMGTITKDQYEYWSDNDGFEEYMVAVDYDPADANKEIPKRAQFDQPFYEYGDICHMSGPEWDDSQTMYIEEIDKNGKPMEDDDGNFVQDIQHDFGDLESLGAEIICSEE
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