NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181419_1001971

Scaffold Ga0181419_1001971


Overview

Basic Information
Taxon OID3300017728 Open in IMG/M
Scaffold IDGa0181419_1001971 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6796
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042879Metagenome157Y
F097256Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181419_100197113F097256GAGMTLEEIKDTIKKSPYSMVDFSKHVAIYMGVEWSNKFKERIYQLLSPKGHGKPSEDELSAMVFWCEVQTDPHWYAHRYYRSKDLPKKYLLLRDWLTGRRSYNRLQVKKMLDYISRLL
Ga0181419_10019717F042879N/AMSKAKGRRTVTKAIAFFHEKGMIVDEVELGGRFRKSKDLFAGLCTKCWLEECNHSDTKFDGFDIIAMDGSNVWLVQIKTNRPPTQKSYIRFAKKFASRYIRILAMTWYDRKGWVTHTFNKNGTVTKRDLRKTNEKKND
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