NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181419_1004219

Scaffold Ga0181419_1004219


Overview

Basic Information
Taxon OID3300017728 Open in IMG/M
Scaffold IDGa0181419_1004219 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4550
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005819Metagenome / Metatranscriptome389Y
F025038Metagenome / Metatranscriptome203N
F048992Metagenome147N
F054022Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0181419_100421910F005819AGGMDYIDDMSLALPNQQQVGESNVDFKRFQYYLGLGASRTLKKVSNNFSLTDRRIYQISSKNQWVDRVKAINKMLNEQIVQEVYAQVGETARDLADSLKPLIFRIISEINERDLASMNPTELKGILDVCYKMVSQIYGLGSPQVQVTQVEYPQIKFKWDWEQDDEPDY
Ga0181419_10042193F025038GGAGVINANNRRFFVEDEYNLYDVKKARPFWQDICTVNKWDIIKDDEDFKEDFVCQINNELYYMELQVVGYWHNFDLSYISNVRISASKVKLLREKKNGGLVFLNCVPNRFFAIHVNQVNEDMKKDSVREQFYEIPLRSINVNEVNVLDTDLCDCLENHLPIMKRSDGRMAFAQKDYNIRGANGICC
Ga0181419_10042195F048992GAGMWCLMEYAADDINYGYMSIIMHINSEYTLIDKIENIREIDGTIVHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDVYVVNDQGNTTMIDEDLDHLISLLHILYVNKKAEEDSLLTRALNPHTYRKAAKKMFYNEDPPF
Ga0181419_10042196F054022N/AMKIPHFKKGLKVQFVEAATDFIDPPTQDILWRYGKILFQVKSEHGAIFYFIEENKKKVKISRYLIFPVD
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