NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181396_1048466

Scaffold Ga0181396_1048466


Overview

Basic Information
Taxon OID3300017729 Open in IMG/M
Scaffold IDGa0181396_1048466 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027054Metagenome / Metatranscriptome196N
F049006Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0181396_10484662F027054N/AMTKTKKETSRHWTVELNVGSKRNMGKLRHSKTSGYRYAYHDLNHVREKVKNRFDGGSGNIVKAMFEFDGTYNDEIEKSFYIAFSFYGNIETFKDEDGIEVEHMSLSDRKILEDKLTILCMELEQECIGYNIKEWTSSTFYPTGKQDLIYHPNYEGEQMIFEDEYFMTFGYHKLSSFEKLHTV
Ga0181396_10484663F049006N/ACTRHGVDQWIVMDDLLLNGKQHPHDLTVNDLNEFMWSTY
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