NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181415_1016851

Scaffold Ga0181415_1016851


Overview

Basic Information
Taxon OID3300017732 Open in IMG/M
Scaffold IDGa0181415_1016851 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030436Metagenome185N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0181415_10168512F030436N/AMKSTLERIAELIEEYNSTDIFDGNKLNQQLKELTSRLYHIETMRTKAHESYEKVIHTKVAEGFSVARATNEAKVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVTKDY
Ga0181415_10168513F056150N/AMDRKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGEDFILQLDSENSIKKYVYKLCIYQIISERGHYRTKYYIPSHFSSIDEIETYNNSCFKDEVLNDLINSLDGLDKIMMEQLLLCSGNKNCLAKKSNIHQNTIQYKFKELANKIKQKWTLNEFYT
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