NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181426_1004126

Scaffold Ga0181426_1004126


Overview

Basic Information
Taxon OID3300017733 Open in IMG/M
Scaffold IDGa0181426_1004126 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2834
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010128Metagenome / Metatranscriptome308Y
F049552Metagenome / Metatranscriptome146Y
F069999Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181426_10041263F049552N/AMEKKMFEFWKVINMMDFNGRGYQQAGRWLVEDSGLTFSQIKEVRNMATRKVNHLYKQFSDDVQISDDGFDDVLWQTVANGHDSFYDCTAKSLTEMYNENRYTESFAYAFHIVGNIEDEQFAANKFLKRERAMKHIEEMRRYGGGFDQKLLAAFEHADGNNKRKLALGFPELFEHLVD
Ga0181426_10041266F069999N/AMSLLNNLIPEVREQLEADKEQYPLLYKTIIADLQRAQLSTDVKVSTAKQLINYAEDANVKFESDNNFILKLYNVFGR
Ga0181426_10041268F010128N/AMAKDNPTKSGGMRRMDELVALRSVFGNDSVLLEELVRVMSNRDANYLFRRVAKSFDVTGALNKELDVINQRD
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