NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181431_1003154

Scaffold Ga0181431_1003154


Overview

Basic Information
Taxon OID3300017735 Open in IMG/M
Scaffold IDGa0181431_1003154 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4376
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001588Metagenome / Metatranscriptome667Y
F003769Metagenome / Metatranscriptome469Y
F020898Metagenome / Metatranscriptome221Y
F050396Metagenome / Metatranscriptome145Y
F098809Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181431_100315411F050396GAGGMQNVNTLNTLQARKLVATVLAEKNASFWNSWTNVVWKDNAKDATKRNLCFGILGDKFTEGDCKWLKLLVGCDKVHTTFGGRYLRLVGVKYDS
Ga0181431_100315412F098809N/AYRYDDDCINEGIAEHFFDYCKKHNILEFYFKQTDAHDYDGADADLRM
Ga0181431_10031545F001588GAGGMQNTTNNYVFLNAADAAIVVTVNNVVVGAAYTATQLAALFTANNVNVSTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALA
Ga0181431_10031546F020898GAGGMQTTKVSLNKRVNNLTAKLMQNTNEFVMQESTKNSCNSIYKNFNYSNKTRCADGDEIHFTAQMYNKFYTGRLCLLTFKNDAFVAMHTID
Ga0181431_10031547F003769N/AMQQLKTLTVKTNNKVESVHMQTLYAIIENCFNNLQVMEADCTSANYFINSANIFAQLQMLYAQNECNEYVSLQSIMQVFANNITYYDESSLYTQVVANTAMQKVNLNNYTYLSN
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