NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181428_1008533

Scaffold Ga0181428_1008533


Overview

Basic Information
Taxon OID3300017738 Open in IMG/M
Scaffold IDGa0181428_1008533 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2338
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F082388Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181428_10085331F082388N/AAARLLSRPGVGGAVGGLGAGAAVEFFIDQFGQTKKLVITRKMQRDVKKLFMMSGGDFNMTAQLYRMATGRSITGEQVVMIITKTFKNQGPYVTKAAVRKTRSTIRKMETLCDLKDRLAPPRRPAPRRRATSTTKVLQVK
Ga0181428_10085332F001607AGGMPVIANNVSLTAGSSSTNIFDNTNYQFVNEGTEIRVSAAVVGANDGVTGSNVNYRFTINNTEFADDAIVPALVTGQPFTDGATSYRTNAVIATGQSRNRPLLVFRNQTAGTLVVKFYVFISQQA
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