NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181433_1000120

Scaffold Ga0181433_1000120


Overview

Basic Information
Taxon OID3300017739 Open in IMG/M
Scaffold IDGa0181433_1000120 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25345
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010243Metagenome / Metatranscriptome306Y
F048242Metagenome148Y
F060928Metagenome / Metatranscriptome132N
F078930Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181433_100012030F060928N/AMKKTELHDMVLETVNEYISEAELKTGDNEFTIKVDVNRNPTKKGIKIQLIPKGDTVLVDPDEKIDVNEKVQRAMNQKLGKYDLQVSIDPDIKQATDNPNVLGYYIPLNQFKNLITKALKG
Ga0181433_100012031F048242N/AMRKRRNIPTLPIDFVSDIDNKVNYQKILYSSILDGVEQTLKNGKLSFVMARVDDGRNVKDVSILKESFKTNLETVLDFYEQTEEYELCSKTLNLINQIK
Ga0181433_100012032F010243N/AMSKTQTYVLETKTTQSGIRGERINKVVAESLSEAIHMFAVIKQVRPDQLIKLFSVYEQPSDGK
Ga0181433_100012033F078930N/AMNNQVMANDQLKKDLRDILKIKGKVTKERPVKGLIKKEAFIRFIDNYKYANDRALMLKAEHAVDFVNFEEPFVQAIEALLQLHFNKNQKQIIEWWLYEKWNQMDGNVLQLNNVETDEELPSDTPEELWDLVQSLK
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