NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181433_1001096

Scaffold Ga0181433_1001096


Overview

Basic Information
Taxon OID3300017739 Open in IMG/M
Scaffold IDGa0181433_1001096 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9070
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010243Metagenome / Metatranscriptome306Y
F048242Metagenome148Y
F060928Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0181433_10010963F010243N/AMSKTQTYILETKTTLSGVRGERINKVVAESLTEAIHMFATIKQLRPDQLLKLFSVYEQPSDGK
Ga0181433_10010964F048242N/AMRKRRNIPTLPIDFFSDIDNKVNYQKILYSSILDGVEQTLKNGKLSFVMARVDDGKNVKDVSILKESFKTNLETVLNFYEQTEEYELCSKTLNLINQIK
Ga0181433_10010965F060928N/AMKKTELHDMVLETLNDYVNEAELSTGDNEFTIKVDVNRNPTKKGLKIQLIPKGDTILIDPDEKIDVNEKIQRAMNQKLGKYDLQVSIDPDIKQATDNPNVLGYYIPLNQFKNLITKALKG
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