NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181433_1016792

Scaffold Ga0181433_1016792


Overview

Basic Information
Taxon OID3300017739 Open in IMG/M
Scaffold IDGa0181433_1016792 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1969
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003834Metagenome / Metatranscriptome466N
F014069Metagenome / Metatranscriptome266N
F026154Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0181433_10167921F026154N/ANIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYHTKSKYIRLTKLKEEHEAYRKSRRDNS
Ga0181433_10167923F014069AGGAGGMETVKAPINERVATKVMPLTKWFVEQYFQTYEMMSSDPRFKALPAYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKTVNE
Ga0181433_10167924F003834AGGAMSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVKVLYDDHAKFANEMDSILLQKKGKLDNAIHVLEDKLEQWKKVRKWKNEISSSLLREPDELDRLLKKLCHEETERDYYSGPRGKALQMLDMSKEYCKNLLNAGQSLSTVWGVLNTEMGKEKINTNTIPKPEFLAITK
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