NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181418_1004173

Scaffold Ga0181418_1004173


Overview

Basic Information
Taxon OID3300017740 Open in IMG/M
Scaffold IDGa0181418_1004173 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4211
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → environmental samples → uncultured marine group II/III euryarchaeote KM3_100_D04(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036631Metagenome / Metatranscriptome169N
F049527Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0181418_10041731F036631N/ALGILIPNATLTYAQAGYNSGGMAYRIQNAQTLQVTARGFGVLNGQYCMSESGIGPVRVSPNDILTVYPIPASAGAASNVLAWVETTKGTELMQTLGADDGAAVALTTAINNQTLGDAFFNSVLRSVKVQVQDGHSLTQVQIVDEMGGIVMTIQGGFRGASTGSRSNQYNLDASGIGIRIGKGWSLKVVCKSDE
Ga0181418_10041738F049527GGAMTTQGVEITVGNSSMSKVFTDTSTDGQWSGNVLTDSIAGQSLGILIPNATLTFAQAGYNSGAMAYRIQNAQTLRVSARGFGVLNGQ
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