NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181421_1000614

Scaffold Ga0181421_1000614


Overview

Basic Information
Taxon OID3300017741 Open in IMG/M
Scaffold IDGa0181421_1000614 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10543
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (37.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007304Metagenome / Metatranscriptome353Y
F070006Metagenome / Metatranscriptome123N
F084184Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0181421_100061422F070006N/AMQSKITQIEPKGTYTNASGTFNKYQVYLANGNNYQFLAKGEFKKQVGETIDFEVTNEQYHTAKLIYNKPIQAAPTANREQIIVRQSMVKAAADFHASRPNADIETVIHDAQLLINFVNNG
Ga0181421_100061424F084184N/AMQFNLNTEQQDAILYAVSHTLANKGDMSNQTINDLYDILDMFKIEENKRYGLYSGTHEGL
Ga0181421_100061426F007304GAGMKFDLKIDYLGKKENKHTAEKDFYHLTFKTYNASIEGKFEKSEIRHIIQILDNAVV
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