Scaffold Ga0181399_1042289

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181399_1042289

Scaffold Ga0181399_1042289

Overview

Basic Information
Taxon OID	3300017742 Open in IMG/M
Scaffold ID	Ga0181399_1042289 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1208
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027158	Metagenome	195	N
F101070	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181399_10422892	F101070	AGGAGG	VGVNKIRVDPLEMEAGDLIVTDGRMSLELGDVLLAVCKLSDLELSQSNKRHPFIDGRRVGDHWRLLSRLGVVEIWLDPYASWVVQVVKGQKETST
Ga0181399_10422894	F027158	N/A	QAGLIGLKDGSPVYTSKADKAAKAGATKARRQGVLSEVTEFFASPIGQSTKFFSIKPTSGMFAACARAINANVEASREDILWSLKQLEKQGLARQVGIKAKVISDDQRGSYKIPVVVDVSEVNNFQRRWVHTIEAVPAEDAPAQDDSAE

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