NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181402_1002467

Scaffold Ga0181402_1002467


Overview

Basic Information
Taxon OID3300017743 Open in IMG/M
Scaffold IDGa0181402_1002467 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6349
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067405Metagenome125N
F072424Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0181402_10024672F072424N/AMSAQVKKVLAPLKPVCSVVKKNSALLTTLLFCVIAFSMLPLNLVMKSNVQKRVMNKLNMVLTSSVGQVFLFLLFVCLYVNADVENMVLLLYVLWLSNNQ
Ga0181402_10024675F067405N/AMSEDFLDLKLLVKEMIQGKIQINKPLVITSSDRTKSEELSFLSHVLKYNDIKKETMFVFLNEVLDVFNKQMNKLMKNENIQKYIDNIKGEWGDLSDILFEDLFTEDQVRLMENILENINELCRRFKEINKSVESNNVTDVVEEADLVDRMDTFVKSIREFNENTEEIMEQLNRYEGNLNKLNTCILLDLSMKNKKLYLEYNKINEDKNIPENIQNVFLNYLLILNLIKKQIVYYKKTVKKVEEIANNMEKHTVSTKITVKSHDKLFMSQQHERGVESYLGGLTL
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