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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017743 Open in IMG/M |
| Scaffold ID | Ga0181402_1007519 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3381 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007770 | Metagenome | 345 | Y |
| F024089 | Metagenome / Metatranscriptome | 207 | Y |
| F039679 | Metagenome | 163 | Y |
| F086827 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181402_10075194 | F024089 | N/A | MNKLEQAMGNMSNIQENIDILMYAIGDAPRQYTEDELLNMLIGMSQLHQTLYDKLWVEYQNFKQEHRVFDEDDIFDQNHLNNEKKVK |
| Ga0181402_10075195 | F086827 | N/A | MQACLELEKKYKDILLKKFLDHVHLVELQHDAKTEGDNTDYWNSLKLDGGNFVDFNFHMMSEWDDPDRSWTCEVYSVDPPTEDNKYHSINTDHTLFLAFYHPESKELEIA |
| Ga0181402_10075196 | F007770 | N/A | MSGEGLSVSFRRTQYTAKSNNELLEEFQKIIYNSRVMKHMKWYGKAHTLDILEHGDDNRQKFEQEYVAIKDTFQFEISVYESWYEDADLYESHEIEDSFVSLARKFANDNALMYFPNGFPAEWIEQEIIDGEKNWNHYNVKPDDKNIDKICDVWYRYGIMKLQAFDEKVESQLWGEARDKIKQLMEHEYAK |
| Ga0181402_10075198 | F039679 | GGAG | MSVENSHLKIRKELVEDNISVPVRFLDYQEEDWIADSATLDMDCEYCTDGEQLDDVAGYNIIVKITDPSKKDKYGNPWKDRLAFGISSDYDWN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |